ClaRNA

Doublet Group distance statistics: 54304

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C5 A 0, 0.000, 0.002, 0.003, 0.003 max_d=0.003 avg_d=0.002 std_dev=0.002
N1 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
C2 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
N3 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
C2' A 0, 0.000, 0.003, 0.005, 0.005 max_d=0.005 avg_d=0.003 std_dev=0.003
O2 A 0, 0.000, 0.003, 0.005, 0.005 max_d=0.005 avg_d=0.003 std_dev=0.003
C1' A 0, 0.000, 0.003, 0.005, 0.005 max_d=0.005 avg_d=0.003 std_dev=0.003
C4 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C6 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
C3' A 0, 0.000, 0.005, 0.009, 0.009 max_d=0.009 avg_d=0.005 std_dev=0.005
O4 A 0, 0.000, 0.006, 0.012, 0.012 max_d=0.012 avg_d=0.006 std_dev=0.006
C4' A 0, 0.000, 0.006, 0.012, 0.012 max_d=0.012 avg_d=0.006 std_dev=0.006
O2' A 0, 0.000, 0.009, 0.018, 0.018 max_d=0.018 avg_d=0.009 std_dev=0.009
P B 0, 0.000, 0.011, 0.021, 0.021 max_d=0.021 avg_d=0.011 std_dev=0.011
OP1 B 0, 0.000, 0.012, 0.024, 0.024 max_d=0.024 avg_d=0.012 std_dev=0.012
C5' A 0, 0.000, 0.013, 0.026, 0.026 max_d=0.026 avg_d=0.013 std_dev=0.013
C2 B 0, 0.000, 0.015, 0.031, 0.031 max_d=0.031 avg_d=0.015 std_dev=0.015
N3 B 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
O4' A 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
OP2 B 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
O5' B 0, 0.000, 0.018, 0.036, 0.036 max_d=0.036 avg_d=0.018 std_dev=0.018
O2 B 0, 0.000, 0.020, 0.040, 0.040 max_d=0.040 avg_d=0.020 std_dev=0.020
C5' B 0, 0.000, 0.020, 0.040, 0.040 max_d=0.040 avg_d=0.020 std_dev=0.020
O3' A 0, 0.000, 0.021, 0.041, 0.041 max_d=0.041 avg_d=0.021 std_dev=0.021
O5' A 0, 0.000, 0.022, 0.044, 0.044 max_d=0.044 avg_d=0.022 std_dev=0.022
OP2 A 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
P A 0, 0.000, 0.024, 0.048, 0.048 max_d=0.048 avg_d=0.024 std_dev=0.024
C1' B 0, 0.000, 0.025, 0.049, 0.049 max_d=0.049 avg_d=0.025 std_dev=0.025
OP1 A 0, 0.000, 0.025, 0.049, 0.049 max_d=0.049 avg_d=0.025 std_dev=0.025
N1 B 0, 0.000, 0.025, 0.051, 0.051 max_d=0.051 avg_d=0.025 std_dev=0.025
C4' B 0, 0.000, 0.025, 0.051, 0.051 max_d=0.051 avg_d=0.025 std_dev=0.025
C2' B 0, 0.000, 0.026, 0.051, 0.051 max_d=0.051 avg_d=0.026 std_dev=0.026
C3' B 0, 0.000, 0.029, 0.058, 0.058 max_d=0.058 avg_d=0.029 std_dev=0.029
C4 B 0, 0.000, 0.029, 0.059, 0.059 max_d=0.059 avg_d=0.029 std_dev=0.029
O4' B 0, 0.000, 0.031, 0.061, 0.061 max_d=0.061 avg_d=0.031 std_dev=0.031
O2' B 0, 0.000, 0.031, 0.061, 0.061 max_d=0.061 avg_d=0.031 std_dev=0.031
O4 B 0, 0.000, 0.031, 0.063, 0.063 max_d=0.063 avg_d=0.031 std_dev=0.031
O3' B 0, 0.000, 0.032, 0.063, 0.063 max_d=0.063 avg_d=0.032 std_dev=0.032
C6 B 0, 0.000, 0.041, 0.081, 0.081 max_d=0.081 avg_d=0.041 std_dev=0.041
C5 B 0, 0.000, 0.043, 0.087, 0.087 max_d=0.087 avg_d=0.043 std_dev=0.043

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01
C2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01
O2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.01 0.01 0.01 0.01
O3' 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.01 0.01 0.01 0.01
O4 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
O4' 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O5' 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00
OP1 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00
OP2 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00
P 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.01 0.01 0.00 0.01 0.00
C2 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00
C2' 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.02 0.01 0.00 0.01 0.00
C3' 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00
C4 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.01 0.01 0.00 0.01 0.00
C4' 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.02 0.01 0.00 0.01 0.00
C5 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00
C5' 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00
C6 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00
N1 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00
N3 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00
O2 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01 0.01 0.00 0.01 0.00
O2' 0.01 0.00 0.01 0.02 0.01 0.02 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.02 0.00 0.02 0.01 0.00 0.01 0.01
O3' 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00
O4 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.02 0.00 0.02 0.01 0.00 0.01 0.01
O4' 0.01 0.00 0.01 0.02 0.01 0.02 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.02 0.00 0.02 0.01 0.00 0.01 0.01
O5' 0.01 0.01 0.02 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.00 0.02 0.02 0.01 0.02 0.02 0.01 0.02 0.01
OP1 0.01 0.00 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.02 0.01 0.02 0.01 0.00 0.01 0.00
OP2 0.01 0.01 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.00 0.02 0.02 0.02 0.02 0.02 0.01 0.02 0.01
P 0.01 0.00 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.02 0.01 0.02 0.01 0.00 0.01 0.01

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00
C2 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.02 0.01 0.00 0.01 0.01
C2' 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01
C3' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.02 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.01
C4 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00
C4' 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00
C5 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00
C5' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00
C6 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00
N1 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.01
N3 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00
O2 0.01 0.00 0.01 0.02 0.01 0.02 0.00 0.02 0.00 0.00 0.01 0.00 0.01 0.02 0.01 0.03 0.02 0.01 0.02 0.01
O2' 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01
O3' 0.01 0.02 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.00 0.01 0.01 0.02 0.01 0.02 0.02
O4 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00
O4' 0.00 0.02 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.03 0.00 0.01 0.01 0.00 0.01 0.00 0.02 0.01
O5' 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.02 0.01 0.02 0.01 0.01 0.00 0.01 0.01 0.00
OP1 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00
OP2 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.02 0.01 0.02 0.01 0.01 0.00 0.00
P 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.00 0.01 0.00 0.00 0.00 0.00