sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-1959-1979
X
>1L8V-A65-A85
X
>1L8V-B65-B85
X
>1MZP-B42-B36
X
>2R8S-R66-R86
X
>364D-B4-C12
X
>3G9C-S100-S119
X
>1HR2-A65-A85
X
>1HR2-B66-B86
X
>1GID-B65-B85
X
>1GID-A65-A85
X
</seq>
<hsp>
0 1:0.498067857482
0 2:0.492352974492
0 3:0.559886726581
0 4:0.44563625303
0 5:0.427306670605
0 6:0.720984051871
0 7:0.390205418516
0 8:0.322013194286
0 9:0.404569147019
0 10:0.346114916978
1 2:0.018432137006
1 3:0.684492302383
1 4:0.205195915651
1 5:0.667088996527
1 6:0.99999932036
1 7:0.160782776297
1 8:0.238846296419
1 9:0.472377781095
1 10:0.398110314043
2 3:0.678184080258
2 4:0.196586525863
2 5:0.660356049907
2 6:0.995512596654
2 7:0.162322498543
2 8:0.236738583312
2 9:0.465378101591
2 10:0.390587035546
3 4:0.561242810204
3 5:0.471595509818
3 6:0.401192555438
3 7:0.649957801964
3 8:0.55464205917
3 9:0.276779765942
3 10:0.342460512641
4 5:0.510801946938
4 6:0.893944112271
4 7:0.20798581371
4 8:0.237803537112
4 9:0.37454795468
4 10:0.299728424555
5 6:0.602841705648
5 7:0.60231688914
5 8:0.531849468931
5 9:0.460028509205
5 10:0.427810631391
6 7:0.938250856154
6 8:0.822282239587
6 9:0.573907503068
6 10:0.6342297895
7 8:0.142987698416
7 9:0.439384464191
7 10:0.362049114546
8 9:0.356855303043
8 10:0.28133492253
9 10:0.0944412817292
</hsp>