sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1E-A1047-A1071
X
>3F1G-A1047-A1071
X
>2UXC-A1047-A1071
X
>2UUA-A1047-A1071
X
>3KNH-A1038-A1062
X
>2UUB-A1047-A1071
X
>1XMQ-A1042-A1066
X
>2VQF-A1047-A1071
X
>2VQE-A1047-A1071
X
>1N32-A1047-A1071
X
</seq>
<hsp>
0 1:0.0286618830839
0 2:0.580992005094
0 3:0.545788090943
0 4:0.920928821985
0 5:0.301537218063
0 6:0.707605455458
0 7:0.667912230625
0 8:0.431381245589
0 9:0.50804927731
1 2:0.576591089453
1 3:0.539104721388
1 4:0.909477498465
1 5:0.292055311475
1 6:0.698518206703
1 7:0.656124186106
1 8:0.425689643335
1 9:0.498882961206
2 3:0.448149939637
2 4:0.999995749292
2 5:0.404238298277
2 6:0.724760823778
2 7:0.762485893729
2 8:0.242498313666
2 9:0.571148248842
3 4:0.778236832827
3 5:0.346218287156
3 6:0.444662178046
3 7:0.48602083459
3 8:0.30663224127
3 9:0.476794236714
4 5:0.903533782144
4 6:0.720523992947
4 7:0.840507128118
4 8:0.850913562991
4 9:0.964207640188
5 6:0.6124762687
5 7:0.522383984867
5 8:0.266281431286
5 9:0.340456487155
6 7:0.386029711402
6 8:0.521574444629
6 9:0.552920698488
7 8:0.570135000365
7 9:0.317845405482
8 9:0.419351287919
</hsp>