sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3HAX-E54-E56
X
>3LWO-D52-D54
X
>3LWQ-D52-D54
X
>2RFK-E18-E20
X
>3LWV-D52-D54
X
>2HVY-E55-E57
X
</seq>
<hsp>
0 1:0.433543240653
0 2:0.478499871494
0 3:0.754724086334
0 4:0.431924682693
0 5:0.409073543324
1 2:0.52307728793
1 3:1.0
1 4:0.448146004545
1 5:0.508155143239
2 3:0.583290546553
2 4:0.299676340724
2 5:0.56047014836
3 4:0.75751435021
3 5:0.856956757009
4 5:0.360919041142
</hsp>