sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A2487-A2382
X
>2J03-A2487-A2382
X
>3OHZ-A2440-A2335
X
>3OH5-A2440-A2335
X
>3OI1-A2440-A2335
X
>2ZJR-X2262-X2316
X
>3OH7-A2440-A2335
X
>3F1E-Z48-Z14
X
>3F1G-Z48-Z14
X
>2CSX-D48-D14
X
</seq>
<hsp>
0 1:0.0301464309488
0 2:0.383715290397
0 3:0.482075860578
0 4:0.358396926709
0 5:0.549492374655
0 6:0.478083312542
0 7:0.959320332023
0 8:0.958251604438
0 9:0.999997094711
1 2:0.380328400652
1 3:0.484108433482
1 4:0.353371318541
1 5:0.553816601492
1 6:0.478334594469
1 7:0.950339204256
1 8:0.949250187449
1 9:0.993719980374
2 3:0.218428004283
2 4:0.0723397200174
2 5:0.368251824578
2 6:0.237156969154
2 7:0.768916835451
2 8:0.768588455591
2 9:0.885968071812
3 4:0.246571055313
3 5:0.195326583679
3 6:0.0723882357415
3 7:0.654613659279
3 8:0.654756419322
3 9:0.814767700184
4 5:0.39953467307
4 6:0.251752727005
4 7:0.769949728528
4 8:0.769289773406
4 9:0.88882352787
5 6:0.212207721045
5 7:0.62264599388
5 8:0.623240049827
5 9:0.772588536806
6 7:0.612186367828
6 8:0.61207426802
6 9:0.77504836966
7 8:0.00645083306759
7 9:0.463471275625
8 9:0.463281352084
</hsp>