sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHY-A1104-A1124
X
>3OI0-A1104-A1124
X
>3OGY-A1104-A1124
X
>3OGE-A1104-A1124
X
>3OHD-A1104-A1124
X
>3OHC-A1104-A1124
X
>2J02-A1104-A1124
X
>2J00-A1104-A1124
X
</seq>
<hsp>
0 1:0.0531897218489
0 2:0.53263472012
0 3:0.514731631597
0 4:0.524862358069
0 5:0.509533916379
0 6:0.97755498284
0 7:1.0
1 2:0.501932718471
1 3:0.485268059985
1 4:0.520420158417
1 5:0.505653712849
1 6:0.947710065956
1 7:0.969723627232
2 3:0.0454471256396
2 4:0.619832030112
2 5:0.614277146684
2 6:0.807793063234
2 7:0.824612765283
3 4:0.632415656865
3 5:0.625134739918
3 6:0.840001577109
3 7:0.85715892618
4 5:0.0289078896438
4 6:0.693888135367
4 7:0.711052495327
5 6:0.708674881398
5 7:0.72586702341
6 7:0.0391886990772
</hsp>