sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-61638-61637
X
>1VQM-0825-0824
X
>3OGY-A1384-A1383
X
>1KD1-A825-A824
X
>3GS5-A7-A6
X
>3CCJ-01476-01475
X
>3OGY-A1359-A1358
X
>3R8O-A756-A755
X
>3OHZ-A1777-A1776
X
>3F1F-A1128-A1127
X
</seq>
<hsp>
0 1:0.360980398952
0 2:0.200809612284
0 3:0.396406171441
0 4:0.629075588644
0 5:0.58877071276
0 6:0.801117677207
0 7:0.88567337064
0 8:0.69026223902
0 9:0.811441031327
1 2:0.333239508461
1 3:0.115497511013
1 4:0.305247989811
1 5:0.366866675842
1 6:0.861410793444
1 7:0.586720007552
1 8:0.423481750007
1 9:0.631815293891
2 3:0.372891311159
2 4:0.612092733763
2 5:0.539475181547
2 6:0.869246495372
2 7:0.862625847567
2 8:0.692802504435
2 9:0.827366592774
3 4:0.286389722299
3 5:0.341608097749
3 6:0.837560063738
3 7:0.537342679952
3 8:0.407529950517
3 9:0.583267972859
4 5:0.280272018272
4 6:0.891001755128
4 7:0.329579136341
4 8:0.308047391287
4 9:0.480130983982
5 6:0.841188880307
5 7:0.470291470899
5 8:0.499081666556
5 9:0.532516974419
6 7:1.0
6 8:0.866297176993
6 9:0.687027572882
7 8:0.358981582836
7 9:0.395414507133
8 9:0.395029916447
</hsp>