sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2PWT-B4-B3
X
>3R8O-A1201-A1200
X
>1QTQ-B37-B36
X
>2VQE-A1384-A1383
X
>1VQL-0838-0837
X
>3CME-0838-0837
X
>3CCJ-02670-02669
X
>1XMQ-A1504-A1503
X
</seq>
<hsp>
0 1:0.544545723124
0 2:0.924530921622
0 3:0.730946003258
0 4:0.610729906557
0 5:0.601985902758
0 6:0.729010138983
0 7:0.999997146726
1 2:0.592773614536
1 3:0.769177028455
1 4:0.519184040051
1 5:0.545188035604
1 6:0.714084535297
1 7:0.81821575394
2 3:0.621068076767
2 4:0.634129620161
2 5:0.714375441398
2 6:0.736056744922
2 7:0.771170136743
3 4:0.530793563455
3 5:0.603887233485
3 6:0.516932456838
3 7:0.786630951208
4 5:0.247193773206
4 6:0.211009491146
4 7:0.427245588625
5 6:0.299692107989
5 7:0.434873873944
6 7:0.370547395213
</hsp>