sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1DDY-C4-C3
X
>3R8S-A1526-A1525
X
>1YJW-0462-0461
X
>3CCM-0462-0461
X
>1VQ7-0462-0461
X
>1VQM-0462-0461
X
>1YJ9-0462-0461
X
>3CC2-01240-01239
X
>3CPW-01240-01239
X
>3CCM-01240-01239
X
</seq>
<hsp>
0 1:1.0
0 2:0.799853935149
0 3:0.836839055747
0 4:0.829696382806
0 5:0.845870494935
0 6:0.820770152838
0 7:0.853390340327
0 8:0.937037588919
0 9:0.69835685079
1 2:0.45861084335
1 3:0.478279580177
1 4:0.428977873698
1 5:0.453068077849
1 6:0.383437584628
1 7:0.63529859285
1 8:0.60883067013
1 9:0.510413493958
2 3:0.156990491152
2 4:0.127802522056
2 5:0.183078900577
2 6:0.17358513962
2 7:0.473376727613
2 8:0.440392862208
2 9:0.309474627799
3 4:0.0883352828444
3 5:0.122129901054
3 6:0.152366337655
3 7:0.413061618791
3 8:0.349815907286
3 9:0.273064187815
4 5:0.0803289507624
4 6:0.126838829212
4 7:0.377854207373
4 8:0.332199008608
4 9:0.242116220025
5 6:0.134127822167
5 7:0.334966095245
5 8:0.276510684946
5 9:0.211522563806
6 7:0.425457898294
6 8:0.371040620262
6 9:0.241080283773
7 8:0.155801468888
7 9:0.259784508669
8 9:0.27739382976
</hsp>