sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1QVG-0586-0585
X
>3CC4-0776-0775
X
>1QVG-0776-0775
X
>1YJW-02477-02476
X
>3I56-0776-0775
X
>3KNH-A716-A715
X
>3U5F-61420-61419
X
</seq>
<hsp>
0 1:0.472967828529
0 2:0.562720089908
0 3:0.658879572849
0 4:0.687554098059
0 5:0.913497596077
0 6:0.840232835886
1 2:0.227419527009
1 3:0.347279320583
1 4:0.34213228546
1 5:0.972039125616
1 6:0.946195391326
2 3:0.336981652459
2 4:0.206594056626
2 5:0.84020591541
2 6:0.835235565947
3 4:0.237012185596
3 5:1.0
3 6:0.984037009427
4 5:0.860449607058
4 6:0.872014117568
5 6:0.23071455433
</hsp>