sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-0992-0991
X
>3R8S-A384-A383
X
>3KNH-A264-A263
X
>3CCQ-0992-0991
X
>3G6E-0992-0991
X
>2OTL-0992-0991
X
</seq>
<hsp>
0 1:0.834573195403
0 2:0.993977514523
0 3:0.594461508534
0 4:0.627394527562
0 5:0.712027269763
1 2:0.999999735294
1 3:0.693296755568
1 4:0.766693219388
1 5:0.887253828958
2 3:0.825443488068
2 4:0.762881283277
2 5:0.697086054936
3 4:0.337270430393
3 5:0.34871055592
4 5:0.232312293187
</hsp>