sequences=25
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J02-A202-A201
X
>2OTJ-0912-0911
X
>1YHQ-0912-0911
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>3OIJ-D11-D10
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>3R8S-A2018-A2017
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X
>3F1H-A2136-A2135
X
>2VQF-A310-A309
X
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>3CME-01624-01623
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X
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X
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X
>1YIJ-01678-01677
X
>3CC2-01472-01471
X
>1Q86-A2060-A2059
X
>1VQ4-02634-02633
X
>1VQO-02140-02139
X
>2EEU-A13-A12
X
</seq>
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