sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A1028-A1027
X
>1VQ9-02161-02160
X
>3CCL-02488-02487
X
>1VQO-02161-02160
X
>1FFK-925-924
X
>1NJI-A2488-A2487
X
>3F1E-A62-A61
X
>1YJN-925-924
X
>3F1G-A238-A237
X
>3OH7-A355-A354
X
>3OGE-A1046-A1045
X
</seq>
<hsp>
0 1:0.54245807161
0 2:0.467990983032
0 3:0.537552954609
0 4:0.793851947451
0 5:0.517501564602
0 6:0.618356153542
0 7:0.492884551788
0 8:0.741074001891
0 9:0.629592406453
0 10:0.619366385988
1 2:0.621616918732
1 3:0.110686345783
1 4:0.890692475496
1 5:0.447803813195
1 6:0.211538689981
1 7:0.446484182302
1 8:0.639070708978
1 9:0.766699706343
1 10:0.556432962186
2 3:0.642784256817
2 4:0.984042072718
2 5:0.271481561192
2 6:0.578502489146
2 7:0.682559627472
2 8:0.945676121028
2 9:0.561915999158
2 10:0.495769048111
3 4:0.880769360743
3 5:0.488057494084
3 6:0.230182253415
3 7:0.40036510946
3 8:0.615095094918
3 9:0.737694192419
3 10:0.526715424059
4 5:0.999999053354
4 6:0.904456064985
4 7:0.533320897269
4 8:0.472033353965
4 9:0.641762591634
4 10:0.819409022567
5 6:0.386557268036
5 7:0.639408713044
5 8:0.849304638651
5 9:0.659235189912
5 10:0.480175465963
6 7:0.464221714448
6 8:0.64606148366
6 9:0.694040263567
6 10:0.43703172115
7 8:0.385228300525
7 9:0.490773936468
7 10:0.44924569411
8 9:0.706190526644
8 10:0.686406815184
9 10:0.364613721009
</hsp>