sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X931-X930
X
>3CCU-01517-01516
X
>2J02-A1086-A1085
X
>3KNH-A779-A778
X
>3KNK-A2255-A2254
X
>2J02-A623-A622
X
>2J03-A1585-A1584
X
>1F7U-B24-B23
X
>3OHD-A1343-A1342
X
>2VQF-A211-A210
X
</seq>
<hsp>
0 1:0.365605255093
0 2:0.468481115161
0 3:0.66750173302
0 4:0.421304901226
0 5:0.374574913723
0 6:0.667524660856
0 7:0.407100637345
0 8:0.483429646503
0 9:0.323435383093
1 2:0.680552905941
1 3:0.552905853138
1 4:0.534777471236
1 5:0.446796833811
1 6:0.488840048575
1 7:0.403315821343
1 8:0.315816406896
1 9:0.339191345687
2 3:0.900357250567
2 4:0.389709954619
2 5:0.334101791643
2 6:0.999996687339
2 7:0.757368498874
2 8:0.828733494708
2 9:0.640811556615
3 4:0.604341555398
3 5:0.588296231018
3 6:0.311629971567
3 7:0.325118556371
3 8:0.430764651816
3 9:0.436399580808
4 5:0.215174315917
4 6:0.767438995658
4 7:0.522917665223
4 8:0.633878278044
4 9:0.506341627049
5 6:0.709259308355
5 7:0.501145121717
5 8:0.566056539602
5 9:0.408856954388
6 7:0.337433325112
6 8:0.297891128854
6 9:0.406185284607
7 8:0.272022874241
7 9:0.213747308451
8 9:0.279758190295
</hsp>