sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCS-01748-01747
X
>3CC4-0226-0225
X
>3DIY-A77-A76
X
>1VQM-0226-0225
X
>3F1F-A2464-A2463
X
>3CCV-02159-02158
X
>2OTJ-02159-02158
X
>2OTL-02159-02158
X
</seq>
<hsp>
0 1:0.412034131439
0 2:0.309025186633
0 3:0.42212176033
0 4:0.456712114705
0 5:0.965260789953
0 6:0.844782862451
0 7:1.0
1 2:0.219249628505
1 3:0.112715858127
1 4:0.289326116658
1 5:0.754653466171
1 6:0.69378512482
1 7:0.797966323463
2 3:0.180713505028
2 4:0.315488348851
2 5:0.761152663511
2 6:0.653277697094
2 7:0.783819770972
3 4:0.261736543687
3 5:0.673701446761
3 6:0.602490641911
3 7:0.718833937074
4 5:0.594330676426
4 6:0.50963354797
4 7:0.641083749083
5 6:0.200726582534
5 7:0.177179902458
6 7:0.225245593516
</hsp>