sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-02565-02588
X
>1VQO-02565-02588
X
>1VQK-02565-02588
X
>1VQL-02565-02588
X
>1VQP-02565-02588
X
>3CCM-02565-02588
X
>1VQN-02565-02588
X
>1VQ9-02565-02588
X
>1VQM-02565-02588
X
>1VQ8-02565-02588
X
</seq>
<hsp>
0 1:0.919150938142
0 2:1.0
0 3:0.63254392621
0 4:0.659562731465
0 5:0.714662654888
0 6:0.692352064554
0 7:0.680840675445
0 8:0.684407587044
0 9:0.741763298746
1 2:0.145311818171
1 3:0.44088386967
1 4:0.387947062805
1 5:0.520101216554
1 6:0.397844142342
1 7:0.480580158673
1 8:0.383212976381
1 9:0.359944640887
2 3:0.472029332543
2 4:0.435840771977
2 5:0.550509780149
2 6:0.437976186406
2 7:0.532946959121
2 8:0.435458233354
2 9:0.42372102206
3 4:0.111231034697
3 5:0.220213053215
3 6:0.142367843008
3 7:0.250183970977
3 8:0.136890918695
3 9:0.264894564945
4 5:0.267848605139
4 6:0.0797189307286
4 7:0.266590156754
4 8:0.0790690531431
4 9:0.218323169154
5 6:0.286409408548
5 7:0.136775379978
5 8:0.215963021021
5 9:0.247506085617
6 7:0.302445372655
6 8:0.117509312344
6 9:0.241595563628
7 8:0.201939564159
7 9:0.167517755383
8 9:0.152416889413
</hsp>