sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2VON-C4-C6
X
>2VON-D4-D6
X
>2NZ4-Q33-Q58
X
>2VOD-D4-D6
X
>3L3C-Q33-Q58
X
>2VOD-C4-C6
X
>3U5F-61514-61516
X
>3U5B-21502-21504
X
>1ZH5-D6-D8
X
>1YTY-D6-D8
X
</seq>
<hsp>
0 1:0.0829740907899
0 2:0.43593131019
0 3:0.127071379411
0 4:0.405962607732
0 5:0.137493722686
0 6:0.452415577602
0 7:0.637856208468
0 8:0.826919153239
0 9:0.89833160834
1 2:0.419838428008
1 3:0.123632371408
1 4:0.383296903918
1 5:0.157324605817
1 6:0.411808875271
1 7:0.599420928699
1 8:0.803687664474
1 9:0.86428840398
2 3:0.439261894349
2 4:0.096776974736
2 5:0.457386005053
2 6:0.529008485753
2 7:0.705870511157
2 8:0.911926879174
2 9:0.999998565491
3 4:0.389556259598
3 5:0.0780889266858
3 6:0.377657262339
3 7:0.564792116827
3 8:0.72211571177
3 9:0.792093473931
4 5:0.405920743788
4 6:0.454316382162
4 7:0.6197403
4 8:0.83574950515
4 9:0.920468885916
5 6:0.38616719445
5 7:0.553181182302
5 8:0.709995768264
5 9:0.787075140852
6 7:0.319919029399
6 8:0.541680158305
6 9:0.586467033714
7 8:0.579273510069
7 9:0.582081885884
8 9:0.174070955626
</hsp>