sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CD6-02380-02042
X
>3CME-02380-02042
X
>1VQO-02380-02042
X
>1K8A-A2380-A2042
X
>1VQK-02380-02042
X
>3CMA-02380-02042
X
>1VQN-02380-02042
X
>3OH5-A836-A837
X
>3OH7-A836-A837
X
>3OHK-A836-A837
X
</seq>
<hsp>
0 1:0.257357480598
0 2:0.167830497946
0 3:0.42700180753
0 4:0.125207393671
0 5:0.115973298862
0 6:0.188683341269
0 7:0.88209824865
0 8:0.857172161143
0 9:0.790448206659
1 2:0.220761165252
1 3:0.565594319296
1 4:0.275832556876
1 5:0.18526507976
1 6:0.264044031061
1 7:1.0
1 8:0.978972311025
1 9:0.901821344908
2 3:0.542832004693
2 4:0.113993502289
2 5:0.150639944605
2 6:0.116475392909
2 7:0.82154156243
2 8:0.801028753075
2 9:0.724816590108
3 4:0.467931217564
3 5:0.439876001749
3 6:0.490692409032
3 7:0.949081777959
3 8:0.920952348504
3 9:0.874963575341
4 5:0.130576756577
4 6:0.0864993192915
4 7:0.775086133714
4 8:0.7509332673
4 9:0.682944128076
5 6:0.156578461901
5 7:0.878869674323
5 8:0.853945503522
5 9:0.779835517043
6 7:0.753727711476
6 8:0.73142042891
6 9:0.666378815578
7 8:0.0511746454748
7 9:0.174218889854
8 9:0.156025854347
</hsp>