sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YI2-0306-0327
X
>1YIT-0306-0327
X
>1YJW-0306-0327
X
>3CC2-0306-0327
X
>3CC4-0306-0327
X
>3CCL-0306-0327
X
>3CCQ-0306-0327
X
</seq>
<hsp>
0 1:0.320617700281
0 2:0.645485617058
0 3:0.752270736069
0 4:0.961501743318
0 5:0.999985443065
0 6:0.998723818107
1 2:0.485288983
1 3:0.709952190052
1 4:0.845355719738
1 5:0.911260506292
1 6:0.934228137177
2 3:0.793769363359
2 4:0.580916148704
2 5:0.708345253225
2 6:0.741805401821
3 4:0.609738297719
3 5:0.49166083421
3 6:0.51529919659
4 5:0.277119621165
4 6:0.238739777327
5 6:0.207401567057
</hsp>