ClaRNA

Doublet Group distance statistics: 54555

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C4 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
N3 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
C1' A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
N1 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C2 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C6 A 0, 0.000, 0.003, 0.007, 0.007 max_d=0.007 avg_d=0.003 std_dev=0.003
O2 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
N7 B 0, 0.000, 0.004, 0.009, 0.009 max_d=0.009 avg_d=0.004 std_dev=0.004
C5 A 0, 0.000, 0.005, 0.010, 0.010 max_d=0.010 avg_d=0.005 std_dev=0.005
C5 B 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
C8 B 0, 0.000, 0.009, 0.017, 0.017 max_d=0.017 avg_d=0.009 std_dev=0.009
C4 B 0, 0.000, 0.011, 0.023, 0.023 max_d=0.023 avg_d=0.011 std_dev=0.011
N9 B 0, 0.000, 0.013, 0.026, 0.026 max_d=0.026 avg_d=0.013 std_dev=0.013
O4 A 0, 0.000, 0.014, 0.028, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.014
C6 B 0, 0.000, 0.014, 0.029, 0.029 max_d=0.029 avg_d=0.014 std_dev=0.014
C4' A 0, 0.000, 0.015, 0.031, 0.031 max_d=0.031 avg_d=0.015 std_dev=0.015
O3' A 0, 0.000, 0.016, 0.032, 0.032 max_d=0.032 avg_d=0.016 std_dev=0.016
N3 B 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
O4' A 0, 0.000, 0.018, 0.036, 0.036 max_d=0.036 avg_d=0.018 std_dev=0.018
C2 B 0, 0.000, 0.018, 0.037, 0.037 max_d=0.037 avg_d=0.018 std_dev=0.018
C3' A 0, 0.000, 0.019, 0.037, 0.037 max_d=0.037 avg_d=0.019 std_dev=0.019
N1 B 0, 0.000, 0.019, 0.038, 0.038 max_d=0.038 avg_d=0.019 std_dev=0.019
C1' B 0, 0.000, 0.020, 0.040, 0.040 max_d=0.040 avg_d=0.020 std_dev=0.020
C2' A 0, 0.000, 0.021, 0.042, 0.042 max_d=0.042 avg_d=0.021 std_dev=0.021
N6 B 0, 0.000, 0.022, 0.043, 0.043 max_d=0.043 avg_d=0.022 std_dev=0.022
O2' A 0, 0.000, 0.026, 0.052, 0.052 max_d=0.052 avg_d=0.026 std_dev=0.026
C2' B 0, 0.000, 0.028, 0.055, 0.055 max_d=0.055 avg_d=0.028 std_dev=0.028
O4' B 0, 0.000, 0.028, 0.057, 0.057 max_d=0.057 avg_d=0.028 std_dev=0.028
C5' A 0, 0.000, 0.032, 0.065, 0.065 max_d=0.065 avg_d=0.032 std_dev=0.032
C3' B 0, 0.000, 0.035, 0.070, 0.070 max_d=0.070 avg_d=0.035 std_dev=0.035
C4' B 0, 0.000, 0.036, 0.072, 0.072 max_d=0.072 avg_d=0.036 std_dev=0.036
O5' B 0, 0.000, 0.036, 0.073, 0.073 max_d=0.073 avg_d=0.036 std_dev=0.036
O2' B 0, 0.000, 0.038, 0.075, 0.075 max_d=0.075 avg_d=0.038 std_dev=0.038
O3' B 0, 0.000, 0.038, 0.077, 0.077 max_d=0.077 avg_d=0.038 std_dev=0.038
O5' A 0, 0.000, 0.040, 0.081, 0.081 max_d=0.081 avg_d=0.040 std_dev=0.040
OP2 B 0, 0.000, 0.041, 0.083, 0.083 max_d=0.083 avg_d=0.041 std_dev=0.041
C5' B 0, 0.000, 0.043, 0.086, 0.086 max_d=0.086 avg_d=0.043 std_dev=0.043
P B 0, 0.000, 0.044, 0.089, 0.089 max_d=0.089 avg_d=0.044 std_dev=0.044
OP1 B 0, 0.000, 0.050, 0.099, 0.099 max_d=0.099 avg_d=0.050 std_dev=0.050
P A 0, 0.000, 0.052, 0.105, 0.105 max_d=0.105 avg_d=0.052 std_dev=0.052
OP2 A 0, 0.000, 0.058, 0.116, 0.116 max_d=0.116 avg_d=0.058 std_dev=0.058
OP1 A 0, 0.000, 0.067, 0.135, 0.135 max_d=0.135 avg_d=0.067 std_dev=0.067

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.01 0.01
C2 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00
C2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.01
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
C5 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01
C5' 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.01
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.01 0.01
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.01 0.01
N3 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00
O2 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00
O2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
O3' 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00
O4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.01 0.01
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.02 0.01 0.01
O5' 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00
OP1 0.02 0.01 0.01 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.01 0.02 0.02 0.01 0.00 0.00 0.00
OP2 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00
P 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00
C2 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01
C2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C3' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C4 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01
C4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C5 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C5' 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01
C6 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N1 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00
N3 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01
O2 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01
O2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01
O4 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01
O4' 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00
O5' 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01
OP1 0.01 0.01 0.01 0.02 0.02 0.02 0.02 0.02 0.01 0.02 0.01 0.02 0.01 0.02 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.02
OP2 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01
P 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
C2 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C3' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
C4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
C5' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C8 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01
N1 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00
N6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00
N7 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01
N9 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
O2' 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01
O3' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
O4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
O5' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
OP1 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00
OP2 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
P 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00