sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCM-01796-02485
X
>1VQL-01796-02485
X
>1VQ9-01796-02485
X
>1VQP-01796-02485
X
>1VQM-01796-02485
X
>3CD6-01796-02485
X
>1VQN-01796-02485
X
>1VQK-01796-02485
X
>1VQ8-01796-02485
X
</seq>
<hsp>
0 1:0.771711650817
0 2:0.879193092005
0 3:1.0
0 4:0.784362580452
0 5:0.358514452198
0 6:0.682323961361
0 7:0.591429652424
0 8:0.597640340756
1 2:0.412554237775
1 3:0.462223055324
1 4:0.0910785938557
1 5:0.898779705186
1 6:0.299733710795
1 7:0.348983067898
1 8:0.411865106435
2 3:0.238585402038
2 4:0.468255713947
2 5:0.862266835033
2 6:0.292052661287
2 7:0.355384691168
2 8:0.324477477742
3 4:0.502674777436
3 5:0.980060335738
3 6:0.331375125915
3 7:0.454701678964
3 8:0.416418122249
4 5:0.912608847226
4 6:0.337910158768
4 7:0.40723506319
4 8:0.450912711144
5 6:0.710041805148
5 7:0.672197760995
5 8:0.591319851772
6 7:0.208555868425
6 8:0.167295646002
7 8:0.174674429584
</hsp>