sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3DIZ-A51-A53
X
>3DJ0-A51-A53
X
>3D0U-A48-A50
X
>3DIX-A51-A53
X
>3DIQ-A51-A53
X
>3DIM-A51-A53
X
>3DIL-A51-A53
X
>3DIY-A51-A53
X
>3DJ2-A51-A53
X
>3DIR-A51-A53
X
>3DIO-X51-X53
X
>2CKY-A39-A41
X
</seq>
<hsp>
0 1:0.237209587543
0 2:0.594448811333
0 3:0.936159482526
0 4:0.711533576778
0 5:0.611396900065
0 6:0.45166613797
0 7:0.349420772089
0 8:0.367731175609
0 9:0.666099713931
0 10:0.702837080341
0 11:0.940133804006
1 2:0.467090936319
1 3:0.882745258741
1 4:0.646195396394
1 5:0.557252758137
1 6:0.373688128583
1 7:0.346578853326
1 8:0.304062761202
1 9:0.547165814768
1 10:0.661599456303
1 11:0.914825493823
2 3:0.959641635452
2 4:0.779243209972
2 5:0.754271022694
2 6:0.382230020677
2 7:0.437809906763
2 8:0.482457286692
2 9:0.539185709304
2 10:0.576124015859
2 11:0.949898354766
3 4:0.31352237837
3 5:0.373172832145
3 6:0.999995504395
3 7:0.983559440831
3 8:0.75220580779
3 9:0.586533737322
3 10:0.959001122918
3 11:0.829313325605
4 5:0.243663338093
4 6:0.835708335685
4 7:0.784579905041
4 8:0.572057875712
4 9:0.503014263486
4 10:0.906163353761
4 11:0.901926140208
5 6:0.753966546602
5 7:0.737741776442
5 8:0.497221954321
5 9:0.480696100824
5 10:0.810031731573
5 11:0.786560980374
6 7:0.229468805001
6 8:0.372574258141
6 9:0.499371510081
6 10:0.360682945646
6 11:0.760170373149
7 8:0.317734414278
7 9:0.560918255668
7 10:0.49681582452
7 11:0.865997463767
8 9:0.45146226717
8 10:0.521454696759
8 11:0.792625917378
9 10:0.492503521234
9 11:0.563478997865
10 11:0.516403490355
</hsp>