sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3HHN-C91-C51
X
>3B4C-B44-B18
X
>2HO7-B44-B18
X
>3B4B-B44-B18
X
>2H0S-B44-B18
X
>2HO6-B44-B18
X
>2H0X-B44-B18
X
>2GCS-B44-B18
X
>2H0W-B44-B18
X
>2GCV-B44-B18
X
</seq>
<hsp>
0 1:0.940360009119
0 2:0.659969791982
0 3:0.868788022869
0 4:0.678014690726
0 5:0.703430419569
0 6:0.999999893711
0 7:0.97363486672
0 8:0.855751168139
0 9:0.921480916388
1 2:0.420089317913
1 3:0.573767347404
1 4:0.425833078856
1 5:0.607957310096
1 6:0.315358446158
1 7:0.322036830048
1 8:0.383278555245
1 9:0.386164616937
2 3:0.354703312128
2 4:0.149069237068
2 5:0.24599797651
2 6:0.413819595896
2 7:0.415019520388
2 8:0.226695403854
2 9:0.304956946299
3 4:0.274163472981
3 5:0.348980059677
3 6:0.450824154639
3 7:0.44405860568
3 8:0.299565905377
3 9:0.296078168869
4 5:0.253241756076
4 6:0.415327173207
4 7:0.403722504635
4 8:0.230453256688
4 9:0.271822299436
5 6:0.556078369168
5 7:0.564265661799
5 8:0.310446373926
5 9:0.358281006515
6 7:0.0840027166884
6 8:0.255840579234
6 9:0.243320828194
7 8:0.270667860226
7 9:0.255735897035
8 9:0.103110486246
</hsp>