sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A402-A403
X
>3R8S-A386-A387
X
>3KNI-A402-A403
X
>3F1F-A409-A410
X
>3F1H-A409-A410
X
>3OHJ-A402-A403
X
>3OHK-A402-A403
X
>3OHZ-A402-A403
X
>3OI1-A402-A403
X
>3OH5-A402-A403
X
</seq>
<hsp>
0 1:0.592291831633
0 2:0.69823763411
0 3:0.672646715233
0 4:0.683418453619
0 5:0.716338398757
0 6:0.756851912039
0 7:0.79268619772
0 8:0.821969534078
0 9:0.742785130413
1 2:0.918825341474
1 3:0.78270134227
1 4:0.791507779485
1 5:0.633501228023
1 6:0.643640484507
1 7:0.610930604782
1 8:0.648297379864
1 9:0.746312614589
2 3:0.842515524461
2 4:0.857185362446
2 5:0.944829077348
2 6:1.0
2 7:0.929509347093
2 8:0.952913210924
2 9:0.984735600199
3 4:0.0415954204284
3 5:0.412994668429
3 6:0.446772343717
3 7:0.479257868526
3 8:0.486381121475
3 9:0.338290706482
4 5:0.408962802985
4 6:0.440344010139
4 7:0.471421339189
4 8:0.47516661433
4 9:0.32241022805
5 6:0.0808053624327
5 7:0.226627326059
5 8:0.247891251116
5 9:0.208942587594
6 7:0.227849751758
6 8:0.233854674671
6 9:0.218625594187
7 8:0.0752710790035
7 9:0.334798511511
8 9:0.333558046044
</hsp>