sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3DIR-A93-A42
X
>3DIM-A93-A42
X
>3DIZ-A93-A42
X
>3DIG-X93-X42
X
>3DIY-A93-A42
X
>3DIX-A93-A42
X
>3DIQ-A93-A42
X
>3DJ0-A93-A42
X
>3DIO-X93-X42
X
>3DIL-A93-A42
X
</seq>
<hsp>
0 1:0.999998230572
0 2:0.63371807296
0 3:0.706459505616
0 4:0.748880324229
0 5:0.671751398662
0 6:0.745823773159
0 7:0.996702554175
0 8:0.730075597259
0 9:0.926271608227
1 2:0.516991689149
1 3:0.469412401643
1 4:0.70123978165
1 5:0.608762804115
1 6:0.648556650562
1 7:0.652392452477
1 8:0.634713070399
1 9:0.780624371604
2 3:0.241116050051
2 4:0.404633152978
2 5:0.369723783726
2 6:0.334666309888
2 7:0.604127115761
2 8:0.331782561775
2 9:0.559432212166
3 4:0.312241743396
3 5:0.369399384967
3 6:0.335605016106
3 7:0.714999385907
3 8:0.423716368474
3 9:0.649203383325
4 5:0.345703400139
4 6:0.274688764768
4 7:0.767911615762
4 8:0.489083200124
4 9:0.57551814819
5 6:0.26931165496
5 7:0.533231551177
5 8:0.322206874155
5 9:0.455953247592
6 7:0.555770171429
6 8:0.243040173938
6 9:0.368254272116
7 8:0.441705611567
7 9:0.346107904359
8 9:0.378818567665
</hsp>