sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCE-0127-0126
X
>3CCR-0127-0126
X
>3CCJ-0159-0158
X
>3R8S-B87-B86
X
>3OHC-A818-A817
X
>3OHD-A818-A817
X
>3G71-0127-0126
X
>3CCQ-0127-0126
X
>2OTL-0127-0126
X
>1VQ6-0127-0126
X
>3CCS-0127-0126
X
>1KUQ-B10-B9
X
</seq>
<hsp>
0 1:0.0534158329925
0 2:0.61989880024
0 3:0.366598312464
0 4:0.522746520625
0 5:0.521515336429
0 6:0.0884382122308
0 7:0.0731404117794
0 8:0.0697860757788
0 9:0.0875314689295
0 10:0.0727713124222
0 11:0.361425822971
1 2:0.648314401229
1 3:0.337298994827
1 4:0.486023478071
1 5:0.484842016057
1 6:0.0378320815192
1 7:0.0300387333781
1 8:0.0311815162514
1 9:0.0623135989154
1 10:0.0508793910405
1 11:0.34655259675
2 3:0.875406160531
2 4:1.0
2 5:0.998948797821
2 6:0.669063690178
2 7:0.649950391919
2 8:0.662529863357
2 9:0.678802035675
2 10:0.667560057812
2 11:0.734914696176
3 4:0.362621810134
3 5:0.361592630882
3 6:0.320909809196
3 7:0.334569551123
3 8:0.334922553518
3 9:0.328013463098
3 10:0.333881089071
3 11:0.228396977509
4 5:0.0018651209435
4 6:0.46351008318
4 7:0.48350923041
4 8:0.47080172073
4 9:0.455428648016
4 10:0.469936109747
4 11:0.402085541001
5 6:0.462396313864
5 7:0.482382861218
5 8:0.469638815824
5 9:0.454267340026
5 10:0.468786137267
5 11:0.401054349339
6 7:0.0256732500525
6 8:0.0342226637335
6 9:0.0629918353528
6 10:0.0541269824511
6 11:0.339165562164
7 8:0.0392293286049
7 9:0.0754815348107
7 10:0.0599742639403
7 11:0.341353639275
8 9:0.0400997176864
8 10:0.0287503845932
8 11:0.349654332745
9 10:0.0249953531126
9 11:0.352631141453
10 11:0.351606006041
</hsp>