sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A1238-A1237
X
>3OH7-A1238-A1237
X
>1VTQ-A59-A58
X
>2FMT-D61-D60
X
>2FMT-C61-C60
X
>3TRA-A59-A58
X
>3L0U-A60-A59
X
>3ADD-D73-D72
X
>3I56-01466-01465
X
>2RD2-B58-B57
X
>3U5H-51558-51557
X
</seq>
<hsp>
0 1:0.133397566668
0 2:0.458873198711
0 3:0.810245842458
0 4:0.793181467592
0 5:0.432514663517
0 6:0.707357599191
0 7:0.94370216563
0 8:0.667314946614
0 9:0.389753833355
0 10:0.661614196708
1 2:0.524855128411
1 3:0.866801368476
1 4:0.852448541431
1 5:0.494134742558
1 6:0.749978785764
1 7:0.9999968241
1 8:0.729546077105
1 9:0.45213860568
1 10:0.727211540077
2 3:0.366292791039
2 4:0.359619405033
2 5:0.037622307183
2 6:0.309596548201
2 7:0.489915962341
2 8:0.255034755468
2 9:0.250283028006
2 10:0.275760805141
3 4:0.0785984932083
3 5:0.387379022816
3 6:0.300039980914
3 7:0.176968668267
3 8:0.308512825152
3 9:0.540672328245
3 10:0.320610032203
4 5:0.378991256499
4 6:0.342578644588
4 7:0.224748073264
4 8:0.295568744348
4 9:0.523815978027
4 10:0.287369387333
5 6:0.324006439865
5 7:0.51500403381
5 8:0.279084252488
5 9:0.231943936891
5 10:0.29571759527
6 7:0.32735636057
6 8:0.29216864997
6 9:0.429682759864
6 10:0.346612183969
7 8:0.360183889524
7 9:0.648096413349
7 10:0.388914139758
8 9:0.3715304235
8 10:0.138885077013
9 10:0.40307645484
</hsp>