sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1338-A1337
X
>3OVS-D19-D18
X
>2BTE-E62-E61
X
>2DU4-C59-C58
X
>2J00-V61-V60
X
>2DR5-B19-B18
X
>2DU3-D59-D58
X
>2J00-W60-W59
X
</seq>
<hsp>
0 1:0.519192687014
0 2:0.610840259572
0 3:0.580063860415
0 4:0.614443840376
0 5:1.0
0 6:0.575664984378
0 7:0.807167024879
1 2:0.531051407883
1 3:0.483331213802
1 4:0.397338141532
1 5:0.720479472934
1 6:0.459105148583
1 7:0.599207313564
2 3:0.202558162699
2 4:0.244916349942
2 5:0.757343560086
2 6:0.263888732733
2 7:0.325091928772
3 4:0.1723705986
3 5:0.704599893248
3 6:0.0823713200489
3 7:0.266833773097
4 5:0.725248015871
4 6:0.194682037937
4 7:0.275832074061
5 6:0.661329265553
5 7:0.65254063656
6 7:0.2636470266
</hsp>