sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-6246-6245
X
>3OI1-A2713-A2712
X
>3OHZ-A2713-A2712
X
>3OH7-A2713-A2712
X
>3OH5-A2713-A2712
X
>3KNI-A2461-A2460
X
>2J03-A2061-A2060
X
>2J01-A2061-A2060
X
</seq>
<hsp>
0 1:0.997523375687
0 2:0.995396929509
0 3:1.0
0 4:0.998055557027
0 5:0.99560235794
0 6:0.962934350863
0 7:0.963113721934
1 2:0.00668312829004
1 3:0.0476102045447
1 4:0.0490460224152
1 5:0.0608065569275
1 6:0.19387514325
1 7:0.192786962081
2 3:0.0468112150482
2 4:0.0473953124578
2 5:0.0630353869182
2 6:0.19105283501
2 7:0.189975690549
3 4:0.00749549936843
3 5:0.0407067668177
3 6:0.171845413424
3 7:0.170772113358
4 5:0.044471852254
4 6:0.168101479168
4 7:0.167027941723
5 6:0.173800818321
5 7:0.172751773291
6 7:0.00161819366985
</hsp>