sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHK-A1635-A1634
X
>3OHJ-A1635-A1634
X
>3NDB-M7-M6
X
>1YJW-0127-0126
X
>1QVG-0127-0126
X
>1Q81-A127-A126
X
</seq>
<hsp>
0 1:0.00951174725206
0 2:0.947248548088
0 3:0.441600327684
0 4:0.444089690591
0 5:0.438884321845
1 2:0.943036502635
1 3:0.438981596905
1 4:0.441863942579
1 5:0.43680929501
2 3:0.964279870154
2 4:0.999999104572
2 5:0.9698284137
3 4:0.0522821969239
3 5:0.0466497738139
4 5:0.0449645329055
</hsp>