sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OGE-A42-A356
X
>3KNH-A42-A347
X
>2UXC-A42-A356
X
>3OGY-A42-A356
X
>2UUB-A42-A356
X
>2UUA-A42-A356
X
>1XMQ-A42-A356
X
>2VQE-A42-A356
X
>2VQF-A42-A356
X
>1N32-A42-A356
X
>1FJG-A42-A356
X
</seq>
<hsp>
0 1:0.999995997138
0 2:0.781593078211
0 3:0.0606523110039
0 4:0.796005356689
0 5:0.855498911334
0 6:0.837650296033
0 7:0.703618284976
0 8:0.595307538273
0 9:0.788131992426
0 10:0.655635804285
1 2:0.785774074421
1 3:0.978110086803
1 4:0.720574525462
1 5:0.755975647104
1 6:0.738792462211
1 7:0.770769379978
1 8:0.798801445347
1 9:0.79810487704
1 10:0.822539137177
2 3:0.765116695504
2 4:0.207381540477
2 5:0.315665015066
2 6:0.218349107404
2 7:0.279877682503
2 8:0.351982263061
2 9:0.262847070411
2 10:0.409975192423
3 4:0.781165306793
3 5:0.841514232268
3 6:0.812346313591
3 7:0.676461467969
3 8:0.561037248001
3 9:0.761091451246
3 10:0.635585027409
4 5:0.13958984535
4 6:0.186338327765
4 7:0.255832681682
4 8:0.429770160206
4 9:0.291758525966
4 10:0.353547322603
5 6:0.257135157119
5 7:0.328295609596
5 8:0.525578500728
5 9:0.349247048558
5 10:0.411262945243
6 7:0.192452538744
6 8:0.352842033837
6 9:0.179584603307
6 10:0.344831911858
7 8:0.237871354728
7 9:0.245017184233
7 10:0.283018707647
8 9:0.312661124533
8 10:0.359976484433
9 10:0.299558070751
</hsp>