sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-01385-01395
X
>1VQ9-01385-01395
X
>1VQN-01385-01395
X
>3CCM-01385-01395
X
>3CME-01385-01395
X
>1VQL-01385-01395
X
>1VQK-01385-01395
X
>1VQO-01385-01395
X
>1VQ8-01385-01395
X
</seq>
<hsp>
0 1:0.868924440072
0 2:0.808458879446
0 3:0.514548415591
0 4:0.614165537617
0 5:0.544597178035
0 6:0.92456982524
0 7:0.590843550468
0 8:0.638020703485
1 2:0.876844684328
1 3:0.776879553006
1 4:0.754641991793
1 5:0.666368438121
1 6:0.855718562806
1 7:0.574087580398
1 8:0.610267248605
2 3:0.994430552955
2 4:0.999998206744
2 5:0.517132493582
2 6:0.867562058819
2 7:0.560821712909
2 8:0.752944607478
3 4:0.529048236663
3 5:0.553235720579
3 6:0.792634443856
3 7:0.606788825687
3 8:0.464317902252
4 5:0.54734816768
4 6:0.61099975776
4 7:0.569716038666
4 8:0.447901398651
5 6:0.48248215135
5 7:0.279036085342
5 8:0.267322038573
6 7:0.585595310746
6 8:0.388942950931
7 8:0.32515693597
</hsp>