sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A978-A977
X
>2J03-B11-B10
X
>2J01-B11-B10
X
>3U5D-11441-11440
X
>3F1F-A2459-A2458
X
>3F1H-A2459-A2458
X
>3KNI-B11-B10
X
>1XMQ-A952-A951
X
</seq>
<hsp>
0 1:0.916829457456
0 2:0.917682134081
0 3:0.964583266876
0 4:0.559718405365
0 5:0.567398726284
0 6:0.667788001872
0 7:0.631109703758
1 2:0.0166424072173
1 3:0.892344657612
1 4:0.514529215068
1 5:0.504685312724
1 6:0.361910649609
1 7:0.560533615276
2 3:0.883008224939
2 4:0.51611218516
2 5:0.50612393106
2 6:0.361154763834
2 7:0.565629205833
3 4:0.992935303972
3 5:0.988487482261
3 6:0.874270443283
3 7:0.99999526216
4 5:0.0162774339365
4 6:0.217385819776
4 7:0.527391858894
5 6:0.210176727358
5 7:0.521531385785
6 7:0.547754067661
</hsp>