sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A1193-A1192
X
>3KNK-A1543-A1542
X
>3CCS-02351-02350
X
>3CCQ-02351-02350
X
>3CCJ-0129-0119
X
>3G71-02351-02350
X
>3CCQ-0129-0119
X
>1VQM-0129-0119
X
>1VQO-0129-0119
X
>3CC4-0129-0119
X
>3CD6-0129-0119
X
>3CPW-0129-0119
X
>1VQ8-0129-0119
X
>1YIT-0129-0119
X
>3CCU-0129-0119
X
>3G6E-0129-0119
X
</seq>
<hsp>
0 1:0.181805883692
0 2:0.249549939637
0 3:0.262169189643
0 4:0.8076919749
0 5:0.227207528816
0 6:0.830311622121
0 7:0.849680852104
0 8:0.846948231612
0 9:0.844644143297
0 10:0.836633238485
0 11:0.83663070102
0 12:0.840304948712
0 13:0.83613019847
0 14:0.841324387386
0 15:0.837666893332
1 2:0.125203194619
1 3:0.130802128053
1 4:0.934533721642
1 5:0.10672236189
1 6:0.956115761499
1 7:0.973189799719
1 8:0.970829204422
1 9:0.967992579389
1 10:0.96078986238
1 11:0.96088381653
1 12:0.96422112204
1 13:0.960532016041
1 14:0.965392462809
1 15:0.96190415657
2 3:0.0290021179606
2 4:0.961884560155
2 5:0.0378586361955
2 6:0.983032587296
2 7:1.0
2 8:0.997546926283
2 9:0.994219813932
2 10:0.987659886305
2 11:0.987762891034
2 12:0.990432979904
2 13:0.987430146786
2 14:0.992101540216
2 15:0.988422584572
3 4:0.962380818737
3 5:0.0477993310154
3 6:0.982977890902
3 7:0.999540492175
3 8:0.997254530346
3 9:0.993832305672
3 10:0.987436959373
3 11:0.987582727174
3 12:0.990166221024
3 13:0.98730902221
3 14:0.99189089723
3 15:0.988268518858
4 5:0.946092749814
4 6:0.035686931667
4 7:0.0587471685132
4 8:0.051859213725
4 9:0.0526593396267
4 10:0.0435149452542
4 11:0.0429725499268
4 12:0.0472251669603
4 13:0.0379454424206
4 14:0.0459962894527
4 15:0.0401111228668
5 6:0.967001071616
5 7:0.983442858056
5 8:0.981138774367
5 9:0.977918892517
5 10:0.971435307144
5 11:0.971372769264
5 12:0.974204537763
5 13:0.971318039949
5 14:0.975874727741
5 15:0.972343850761
6 7:0.0322987619482
6 8:0.0286818447223
6 9:0.0325077319191
6 10:0.016492560228
6 11:0.0214967691105
6 12:0.0239408707883
6 13:0.0176124221539
6 14:0.0204259439322
6 15:0.0205479061503
7 8:0.00921164114197
7 9:0.0165235200505
7 10:0.0199020631921
7 11:0.016723024901
7 12:0.0170234956307
7 13:0.0230634037717
7 14:0.0166320086086
7 15:0.0222337380492
8 9:0.0137144419056
8 10:0.0163810064217
8 11:0.0113747721407
8 12:0.0129251828487
8 13:0.0164986561111
8 14:0.0112591023948
8 15:0.0156627915845
9 10:0.0209606205565
9 11:0.0157172186596
9 12:0.0106812236382
9 13:0.0202698280316
9 14:0.0191609018598
9 15:0.0156174842729
10 11:0.00965275992163
10 12:0.0124334718355
10 13:0.00892594470968
10 14:0.00730011262919
10 15:0.0113441282007
11 12:0.00955798270627
11 13:0.00949441206192
11 14:0.00907661980941
11 15:0.00964292144422
12 13:0.013510743475
12 14:0.0118190498366
12 15:0.00895698730513
13 14:0.0094915118872
13 15:0.00663411922466
14 15:0.0113272734058
</hsp>