sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHJ-A2040-A2039
X
>3OHJ-A179-A178
X
>3OH5-A179-A178
X
>1M5K-B62-B61
X
>2J01-A135-A134
X
>1M5K-E62-E61
X
>1M5O-B62-B61
X
>1M5V-E62-E61
X
>1M5V-B62-B61
X
>1M5O-E62-E61
X
</seq>
<hsp>
0 1:0.187576564091
0 2:0.197271178661
0 3:0.154239059691
0 4:0.999999131353
0 5:0.156706274756
0 6:0.147300025852
0 7:0.122256570918
0 8:0.163631591225
0 9:0.125862971729
1 2:0.0581914890956
1 3:0.210338898439
1 4:0.968562187046
1 5:0.148358196901
1 6:0.144458008421
1 7:0.110521503783
1 8:0.146384987496
1 9:0.123163871351
2 3:0.181951959671
2 4:0.949974673602
2 5:0.140664852289
2 6:0.137200735799
2 7:0.119324560832
2 8:0.144174203268
2 9:0.117793004294
3 4:0.926720185817
3 5:0.145776748203
3 6:0.168869339571
3 7:0.170372178618
3 8:0.170245719107
3 9:0.125614321903
4 5:0.944867785792
4 6:0.962728368438
4 7:0.977332704484
4 8:0.950057115168
4 9:0.953392414633
5 6:0.108936219651
5 7:0.0820503262823
5 8:0.0418796385802
5 9:0.0541477631742
6 7:0.0643725006486
6 8:0.0854801104893
6 9:0.113425434251
7 8:0.0691379696097
7 9:0.0725618087503
8 9:0.0813927569998
</hsp>