sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHC-A98-A97
X
>2J02-A98-A97
X
>3OHJ-A1395-A1394
X
>2J00-A98-A97
X
>2UUB-A98-A97
X
>1XMQ-A98-A97
X
>3OGE-A98-A97
X
>2VQE-A98-A97
X
>3OGY-A98-A97
X
>1N32-A98-A97
X
</seq>
<hsp>
0 1:0.129154777157
0 2:1.0
0 3:0.135120357707
0 4:0.124202059374
0 5:0.149096734425
0 6:0.108423332295
0 7:0.141742618013
0 8:0.118413724787
0 9:0.149215287113
1 2:0.973383228343
1 3:0.0154234088672
1 4:0.155994840495
1 5:0.192248319389
1 6:0.186535196684
1 7:0.170768493887
1 8:0.193115014846
1 9:0.181416831086
2 3:0.971635282296
2 4:0.95830446194
2 5:0.954293820311
2 6:0.980325111071
2 7:0.951792813282
2 8:0.977919214231
2 9:0.940280260062
3 4:0.162504419413
3 5:0.198289599683
3 6:0.194674796186
3 7:0.178567548487
3 8:0.201734916608
3 9:0.190597531535
4 5:0.0687005747222
4 6:0.0871537079133
4 7:0.122570175719
4 8:0.0884111939998
4 9:0.110408810106
5 6:0.0781670337044
5 7:0.0947687916252
5 8:0.0782850652909
5 9:0.0972304742909
6 7:0.108798891178
6 8:0.0146941435637
6 9:0.109533038582
7 8:0.109098141748
7 9:0.0503561200466
8 9:0.105139134367
</hsp>