sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A428-A427
X
>1VQ8-02187-02186
X
>1VQK-02187-02186
X
>1VQL-02187-02186
X
>3CC2-02187-02186
X
>1VQO-02187-02186
X
>3CMA-02187-02186
X
>3U5B-21314-21313
X
>3KNK-A2777-A2776
X
>3R8N-A621-A620
X
</seq>
<hsp>
0 1:0.463238793985
0 2:0.454471901691
0 3:0.446516833479
0 4:0.433532230047
0 5:0.459837880346
0 6:0.466156025941
0 7:0.150528701337
0 8:1.0
0 9:0.145978486155
1 2:0.0326335349785
1 3:0.0456901846018
1 4:0.0507057884659
1 5:0.0253141907469
1 6:0.0471064034359
1 7:0.339476267892
1 8:0.584628393073
1 9:0.367935418115
2 3:0.0200692364184
2 4:0.0613051694873
2 5:0.0218822584766
2 6:0.0473459342933
2 7:0.336133946689
2 8:0.605516609932
2 9:0.361257893588
3 4:0.0609976368311
3 5:0.037669535237
3 6:0.0538247269115
3 7:0.331726801825
3 8:0.616078016924
3 9:0.357298325081
4 5:0.0620487608609
4 6:0.0585299767266
4 7:0.311542249612
4 8:0.60144998679
4 9:0.340224282294
5 6:0.0543333009392
5 7:0.339607929858
5 8:0.595523513629
5 9:0.366500801021
6 7:0.345000179621
6 8:0.583783547439
6 9:0.368567038789
7 8:0.871554341176
7 9:0.066925089527
8 9:0.901876841314
</hsp>