sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1589-X1588
X
>3U5D-11780-11779
X
>1N32-A1202-A1201
X
>3CPW-01637-01636
X
>3CME-02534-02533
X
>3CCR-02645-02644
X
>3F1F-A2642-A2641
X
>1YIT-02645-02644
X
>3OHK-A2488-A2487
X
>3OHJ-A2488-A2487
X
</seq>
<hsp>
0 1:0.954033238518
0 2:0.86532636265
0 3:0.999997546432
0 4:0.889404006051
0 5:0.854741612907
0 6:0.874740326059
0 7:0.851539973762
0 8:0.91015208511
0 9:0.904346155367
1 2:0.563150568734
1 3:0.107987540836
1 4:0.215750651037
1 5:0.523741596918
1 6:0.202081777127
1 7:0.536554534041
1 8:0.744761425927
1 9:0.741894559712
2 3:0.622236043056
2 4:0.653161310921
2 5:0.644341146108
2 6:0.641763445215
2 7:0.595105695546
2 8:0.796362600088
2 9:0.790225875253
3 4:0.275361292622
3 5:0.622492922865
3 6:0.235295521964
3 7:0.637929742017
3 8:0.763837160517
3 9:0.761581191388
4 5:0.403790934836
4 6:0.109973113786
4 7:0.436888300539
4 8:0.788655287215
4 9:0.78438352317
5 6:0.483245708997
5 7:0.0797336260031
5 8:0.837384210458
5 9:0.831532634911
6 7:0.506783532105
6 8:0.806879047476
6 9:0.802193449222
7 8:0.859821131882
7 9:0.853710583731
8 9:0.0153676507567
</hsp>