sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-02521-02607
X
>3OH5-A2271-A2269
X
>3CMA-02317-02315
X
>3CCS-02317-02315
X
>3OI1-A2271-A2269
X
>3OHZ-A2271-A2269
X
>3I56-02317-02315
X
>2QA4-02316-02314
X
>1YJW-02317-02315
X
</seq>
<hsp>
0 1:0.975369338491
0 2:0.973637343433
0 3:0.933164245036
0 4:1.0
0 5:0.995677138014
0 6:0.939006934072
0 7:0.932822724439
0 8:0.941530006312
1 2:0.038774766366
1 3:0.0790079243454
1 4:0.0438637088723
1 5:0.0413233129142
1 6:0.0628553890253
1 7:0.105668672704
1 8:0.074921082115
2 3:0.0800726477795
2 4:0.0581372940627
2 5:0.0553789962307
2 6:0.0700365733043
2 7:0.104399649846
2 8:0.0708433662293
3 4:0.117812571942
3 5:0.113530016927
3 6:0.0296573585415
3 7:0.0504609875674
3 8:0.0279341549624
4 5:0.0102792233121
4 6:0.0993692837581
4 7:0.142941670858
4 8:0.113897795788
5 6:0.0950720489023
5 7:0.14055905583
5 8:0.110456525642
6 7:0.0583943216622
6 8:0.0418585081434
7 8:0.0480017108674
</hsp>