sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCS-01689-01688
X
>2QEX-01689-01688
X
>3G71-01689-01688
X
>3G6E-01689-01688
X
>2OTJ-01689-01688
X
>3CCR-01689-01688
X
>1VQ9-01689-01688
X
>1VQO-01689-01688
X
>1YIT-01689-01688
X
>1QVG-01689-01688
X
</seq>
<hsp>
0 1:0.851206866311
0 2:0.421135444648
0 3:0.493787807938
0 4:0.613612324123
0 5:0.361708956808
0 6:0.347104946551
0 7:0.476427533517
0 8:0.574717655671
0 9:0.999997037781
1 2:0.526974553943
1 3:0.681029590796
1 4:0.394419374852
1 5:0.681706941887
1 6:0.641520280614
1 7:0.647323930017
1 8:0.584517228553
1 9:0.52278946208
2 3:0.257594985344
2 4:0.266424251627
2 5:0.207524186109
2 6:0.169097793205
2 7:0.245078425833
2 8:0.274059070706
2 9:0.639189345851
3 4:0.321095742954
3 5:0.319176249755
3 6:0.227135730083
3 7:0.355554041062
3 8:0.248302942813
3 9:0.739855842321
4 5:0.448684390523
4 6:0.357781388072
4 7:0.394189050469
4 8:0.248474290854
4 9:0.541950655478
5 6:0.146329210965
5 7:0.239099874699
5 8:0.373887966351
5 9:0.769415618786
6 7:0.250527333328
6 8:0.297482870595
6 9:0.757280463553
7 8:0.269336633605
7 9:0.636229567654
8 9:0.544062736026
</hsp>