sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OGY-A257-A256
X
>3OGE-A257-A256
X
>3OHD-A257-A256
X
>3OHC-A257-A256
X
>3OHY-A257-A256
X
>3OI0-A257-A256
X
>3F1H-A1352-A1351
X
>3R8T-B9-B8
X
>3F1F-A1352-A1351
X
>2H0Z-B108-B107
X
</seq>
<hsp>
0 1:0.00607219200084
0 2:0.0469597742883
0 3:0.0506335557571
0 4:0.0504822238931
0 5:0.047714191234
0 6:0.55218654824
0 7:0.980493895169
0 8:0.551080384085
0 9:0.501820324858
1 2:0.0438347822598
1 3:0.0469016051871
1 4:0.0458649659866
1 5:0.0434545440715
1 6:0.555122934185
1 7:0.981356106339
1 8:0.554028230763
1 9:0.50318098118
2 3:0.00772505238262
2 4:0.0262744015905
2 5:0.0238928464523
2 6:0.582944108423
2 7:0.960796107387
2 8:0.581938793002
2 9:0.510829436799
3 4:0.0213291569413
3 5:0.0200208065178
3 6:0.58648289854
3 7:0.960242911726
3 8:0.585489002441
3 9:0.512496622045
4 5:0.00551746182435
4 6:0.58154469417
4 7:0.963831736453
4 8:0.580538557951
4 9:0.509650135426
5 6:0.579579944954
5 7:0.962148907976
5 8:0.578580364797
5 9:0.507884332777
6 7:0.985496654445
6 8:0.00622042067418
6 9:0.390386973426
7 8:0.987546575768
7 9:0.999999814061
8 9:0.390936313278
</hsp>