ClaRNA

Doublet Group distance statistics: 54783

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C6 A 0, 0.000, 0.001, 0.002, 0.002 max_d=0.002 avg_d=0.001 std_dev=0.001
N1 A 0, 0.000, 0.001, 0.003, 0.003 max_d=0.003 avg_d=0.001 std_dev=0.001
C5 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
C4 A 0, 0.000, 0.003, 0.005, 0.005 max_d=0.005 avg_d=0.003 std_dev=0.003
O4' A 0, 0.000, 0.003, 0.007, 0.007 max_d=0.007 avg_d=0.003 std_dev=0.003
N3 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
C2 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
N4 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
C1' A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
C4' A 0, 0.000, 0.005, 0.011, 0.011 max_d=0.011 avg_d=0.005 std_dev=0.005
O2 A 0, 0.000, 0.006, 0.011, 0.011 max_d=0.011 avg_d=0.006 std_dev=0.006
C3' A 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
OP2 B 0, 0.000, 0.008, 0.016, 0.016 max_d=0.016 avg_d=0.008 std_dev=0.008
C2' A 0, 0.000, 0.008, 0.017, 0.017 max_d=0.017 avg_d=0.008 std_dev=0.008
OP2 A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
O3' B 0, 0.000, 0.013, 0.025, 0.025 max_d=0.025 avg_d=0.013 std_dev=0.013
P B 0, 0.000, 0.013, 0.026, 0.026 max_d=0.026 avg_d=0.013 std_dev=0.013
O5' A 0, 0.000, 0.013, 0.026, 0.026 max_d=0.026 avg_d=0.013 std_dev=0.013
C5' A 0, 0.000, 0.013, 0.027, 0.027 max_d=0.027 avg_d=0.013 std_dev=0.013
C3' B 0, 0.000, 0.014, 0.028, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.014
P A 0, 0.000, 0.014, 0.029, 0.029 max_d=0.029 avg_d=0.014 std_dev=0.014
O3' A 0, 0.000, 0.016, 0.032, 0.032 max_d=0.032 avg_d=0.016 std_dev=0.016
C4' B 0, 0.000, 0.016, 0.033, 0.033 max_d=0.033 avg_d=0.016 std_dev=0.016
C5' B 0, 0.000, 0.018, 0.036, 0.036 max_d=0.036 avg_d=0.018 std_dev=0.018
OP1 B 0, 0.000, 0.020, 0.041, 0.041 max_d=0.041 avg_d=0.020 std_dev=0.020
C2' B 0, 0.000, 0.021, 0.042, 0.042 max_d=0.042 avg_d=0.021 std_dev=0.021
OP1 A 0, 0.000, 0.023, 0.045, 0.045 max_d=0.045 avg_d=0.023 std_dev=0.023
C8 B 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
C1' B 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
O2' A 0, 0.000, 0.024, 0.047, 0.047 max_d=0.047 avg_d=0.024 std_dev=0.024
N7 B 0, 0.000, 0.024, 0.048, 0.048 max_d=0.048 avg_d=0.024 std_dev=0.024
N9 B 0, 0.000, 0.025, 0.049, 0.049 max_d=0.049 avg_d=0.025 std_dev=0.025
O2' B 0, 0.000, 0.025, 0.049, 0.049 max_d=0.049 avg_d=0.025 std_dev=0.025
C6 B 0, 0.000, 0.025, 0.050, 0.050 max_d=0.050 avg_d=0.025 std_dev=0.025
C5 B 0, 0.000, 0.026, 0.052, 0.052 max_d=0.052 avg_d=0.026 std_dev=0.026
O4' B 0, 0.000, 0.027, 0.054, 0.054 max_d=0.054 avg_d=0.027 std_dev=0.027
C4 B 0, 0.000, 0.028, 0.055, 0.055 max_d=0.055 avg_d=0.028 std_dev=0.028
O5' B 0, 0.000, 0.028, 0.056, 0.056 max_d=0.056 avg_d=0.028 std_dev=0.028
O6 B 0, 0.000, 0.028, 0.056, 0.056 max_d=0.056 avg_d=0.028 std_dev=0.028
N3 B 0, 0.000, 0.031, 0.063, 0.063 max_d=0.063 avg_d=0.031 std_dev=0.031
N1 B 0, 0.000, 0.032, 0.064, 0.064 max_d=0.064 avg_d=0.032 std_dev=0.032
C2 B 0, 0.000, 0.033, 0.065, 0.065 max_d=0.065 avg_d=0.033 std_dev=0.033
N2 B 0, 0.000, 0.035, 0.070, 0.070 max_d=0.070 avg_d=0.035 std_dev=0.035

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00
C2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00
C2' 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00
C4 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.00 0.01
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00
N3 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
N4 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
O2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00
O2' 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00
O3' 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.02 0.00 0.01 0.00 0.01 0.00 0.00
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00
O5' 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
OP1 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.02 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00
OP2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
P 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00
C2 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01
C2' 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00
C3' 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00
C4' 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00
C5' 0.02 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.01 0.02 0.02 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.00 0.01 0.01 0.01
C6 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01
N1 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00
N4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00
O2 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.01 0.01
O2' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01
O3' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01
O4' 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01
O5' 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01
OP1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00
OP2 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00
P 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00
C2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00
C6 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01
C8 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00
N2 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00
N7 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00
N9 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00
O2' 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00
O3' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00
O5' 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00
O6 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.02 0.01 0.01
OP1 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.00
OP2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00
P 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00