sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQN-0554-0555
X
>3U5F-6118-6119
X
>1YJN-9104-9105
X
>3CMA-9104-9105
X
>3CC7-9104-9105
X
>3CMA-0554-0555
X
>3CC2-9104-9105
X
>1VQ4-0554-0555
X
</seq>
<hsp>
0 1:0.828623322719
0 2:0.776955639723
0 3:0.563443349327
0 4:0.368525249146
0 5:0.245996336387
0 6:0.437521989766
0 7:0.335258314834
1 2:1.0
1 3:0.722326942937
1 4:0.787190477252
1 5:0.754994975454
1 6:0.709504415501
1 7:0.712042093061
2 3:0.33155417475
2 4:0.610809482626
2 5:0.54919310006
2 6:0.608713225516
2 7:0.519792640182
3 4:0.399686400934
3 5:0.344015297046
3 6:0.371691378142
3 7:0.323985113021
4 5:0.270806023433
4 6:0.119352569583
4 7:0.360971289209
5 6:0.321624660833
5 7:0.158109229914
6 7:0.369486104525
</hsp>