sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3D2X-B57-B58
X
>3CMA-02301-02302
X
>1M90-A2301-A2302
X
>3CCJ-01474-01475
X
>2OTL-02301-02302
X
>1KD1-A2301-A2302
X
>3D2G-A57-A58
X
>1FG0-A292-A293
X
</seq>
<hsp>
0 1:1.0
0 2:0.929860841539
0 3:0.44853097001
0 4:0.958452728447
0 5:0.916493415978
0 6:0.27392754367
0 7:0.552362692504
1 2:0.0995068181553
1 3:0.639341660691
1 4:0.115555267135
1 5:0.135002285581
1 6:0.830083137068
1 7:0.676893782814
2 3:0.584394760293
2 4:0.0791776312818
2 5:0.114972046337
2 6:0.765935962516
2 7:0.600612345269
3 4:0.600960397594
3 5:0.559803251543
3 6:0.27544973016
3 7:0.439194899657
4 5:0.10254837576
4 6:0.779945201586
4 7:0.601840328881
5 6:0.734301384209
5 7:0.564468307217
6 7:0.37392751945
</hsp>