sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YHQ-953-954
X
>3OH5-A584-A585
X
>2VQF-A891-A892
X
>1FFK-0894-0895
X
>1YI2-0895-0896
X
>3CCS-0895-0896
X
</seq>
<hsp>
0 1:0.999999701951
0 2:0.650952121644
0 3:0.707996841094
0 4:0.730846426622
0 5:0.784380702813
1 2:0.441918579543
1 3:0.338994056592
1 4:0.356377433337
1 5:0.405716694379
2 3:0.29481155272
2 4:0.274130825639
2 5:0.330027794001
3 4:0.127979764436
3 5:0.254672898263
4 5:0.1563385214
</hsp>