sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1115-A1116
X
>1N32-A1032-A1033
X
>1QA6-C45-C46
X
>1KD1-A1370-A1371
X
>1YI2-01370-01371
X
>2QEX-01370-01371
X
</seq>
<hsp>
0 1:0.558475367294
0 2:0.864521945413
0 3:0.879997847124
0 4:0.856261510482
0 5:0.961924110536
1 2:1.0
1 3:0.700679288696
1 4:0.737014460762
1 5:0.866021260322
2 3:0.68898196943
2 4:0.666392631475
2 5:0.777322594656
3 4:0.134216331275
3 5:0.275082612053
4 5:0.206975004306
</hsp>