sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CME-0241-0244
X
>1VQO-0241-0244
X
>3RG5-B52-B55
X
>2J00-A835-A838
X
>2J02-A835-A838
X
>1XMQ-A835-A838
X
>3CME-01804-01788
X
>1QVG-01804-01788
X
>1K8A-A1804-A1788
X
</seq>
<hsp>
0 1:0.240578977517
0 2:0.424472854032
0 3:0.288602115586
0 4:0.273725521857
0 5:0.296200052476
0 6:0.933819669213
0 7:0.797675977956
0 8:0.848433144571
1 2:0.386549396403
1 3:0.226950820382
1 4:0.208350275737
1 5:0.307838831134
1 6:0.999997435718
1 7:0.890502605278
1 8:0.921229147979
2 3:0.303921296275
2 4:0.292337938253
2 5:0.297599351456
2 6:0.784687892371
2 7:0.743192260674
2 8:0.744040216284
3 4:0.0307009507232
3 5:0.25141920909
3 6:0.875540603234
3 7:0.819126994544
3 8:0.847530326921
4 5:0.240801107926
4 6:0.882307111529
4 7:0.818399136426
4 8:0.847639187742
5 6:0.7733751406
5 7:0.651973411683
5 8:0.714054944093
6 7:0.341099348465
6 8:0.267363461506
7 8:0.184726076662
</hsp>