sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-1829-1825
X
>3U5F-6975-61117
X
>3U5H-5835-5831
X
>3U5B-2963-21105
X
>3RKF-C60-C35
X
>3R8T-B46-B35
X
</seq>
<hsp>
0 1:0.978402757151
0 2:0.209002748076
0 3:0.882529151852
0 4:0.735700552635
0 5:0.654401688709
1 2:1.0
1 3:0.178000951222
1 4:0.425552061167
1 5:0.615374300281
2 3:0.892928146703
2 4:0.734531892632
2 5:0.610691603157
3 4:0.386273272004
3 5:0.50176086669
4 5:0.443704801665
</hsp>