sequences=17
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-0408-02288
X
>3G6E-01223-01051
X
>1YJW-01241-01233
X
>3CMA-033-0136
X
>1VQP-01223-01051
X
>1Q86-A2647-A2516
X
>1YHQ-01223-01051
X
>3CPW-01223-01051
X
>2OTJ-01699-01984
X
>1VQM-01980-01705
X
>3G71-01699-01984
X
>3F1F-A1425-A1614
X
>3CME-01980-01705
X
>1M90-A1699-A1984
X
>1M5O-E86-D4
X
>3R8S-A2564-A2506
X
>1VQP-01164-01153
X
</seq>
<hsp>
0 1:0.55561041418
0 2:0.480026415712
0 3:0.404575635691
0 4:0.524390509487
0 5:0.482523958108
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15 16:0.6218331248
</hsp>