sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2597-A2581
X
>1QVG-0962-0952
X
>3PDR-A22-A133
X
>3OV7-D24-D6
X
>2ZJR-X1101-X1077
X
>1Q82-A1144-A1120
X
>3R8N-A984-A1217
X
>1VQM-02481-02465
X
>3U5D-3105-371
X
>3I56-0824-0833
X
>3R8S-A2610-A2045
X
>1M5V-B86-A4
X
</seq>
<hsp>
0 1:0.640636646076
0 2:0.486724728655
0 3:0.17591572697
0 4:0.412752863393
0 5:0.558602881509
0 6:1.0
0 7:0.393662029192
0 8:0.979374216638
0 9:0.829008619129
0 10:0.697295448184
0 11:0.831934220071
1 2:0.238352011414
1 3:0.637747844847
1 4:0.498470388944
1 5:0.506340313175
1 6:0.553272434835
1 7:0.408709731337
1 8:0.561193025863
1 9:0.337501394154
1 10:0.361598263313
1 11:0.584142202016
2 3:0.457881236902
2 4:0.370227004589
2 5:0.389443786336
2 6:0.733663356302
2 7:0.235880141961
2 8:0.653962985434
2 9:0.422468388083
2 10:0.366654874311
2 11:0.601954406959
3 4:0.298581302926
3 5:0.475405416421
3 6:0.990180691904
3 7:0.302211661711
3 8:0.900738464364
3 9:0.765436336502
3 10:0.620059375165
3 11:0.737443283602
4 5:0.312432577801
4 6:0.801849676968
4 7:0.209025869238
4 8:0.643763741623
4 9:0.562266169538
4 10:0.426980901231
4 11:0.504741558894
5 6:0.86888198255
5 7:0.341168934595
5 8:0.620998988772
5 9:0.57410778177
5 10:0.501330976824
5 11:0.528465553298
6 7:0.786660205005
6 8:0.46676383111
6 9:0.49379478241
6 10:0.569881169454
6 11:0.568572596127
7 8:0.648891957388
7 9:0.477389140481
7 10:0.338913693654
7 11:0.516012480674
8 9:0.334250448919
8 10:0.400737454045
8 11:0.255156738102
9 10:0.187874925606
9 11:0.388333709553
10 11:0.342264245485
</hsp>